ancIBD
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Contents:

  • Overview
  • Installing ancIBD
  • Preparing Input for ancIBD: VCF->HDF5
  • Calling IBD
  • Plot ancIBD output
  • Running ancIBD via bash
  • Running ancIBD on X chromosomes (available from ancIBD v0.6)
  • Detecting IBD2 (available from ancIBD v0.6)
  • Frequently Asked Questions (FAQ)
  • API Reference
    • ancIBD
      • ancIBD.IO
        • ancIBD.IO.batch_run
        • ancIBD.IO.h5_duplicates
        • ancIBD.IO.h5_load
        • ancIBD.IO.h5_modify
        • ancIBD.IO.h5_qc
        • ancIBD.IO.ind_ibd
        • ancIBD.IO.prepare_h5
      • ancIBD.ibd_stats
      • ancIBD.plot
      • ancIBD.ancIBD_summary
      • ancIBD.emission
      • ancIBD.hmm
      • ancIBD.loaddata
      • ancIBD.main
      • ancIBD.postprocessing
      • ancIBD.run
      • ancIBD.run_ancIBD
      • ancIBD.run_ancIBDX
      • ancIBD.transition
ancIBD
  • API Reference
  • ancIBD
  • ancIBD.IO
  • Edit on GitHub

ancIBD.IO

Submodules

  • ancIBD.IO.batch_run
  • ancIBD.IO.h5_duplicates
  • ancIBD.IO.h5_load
  • ancIBD.IO.h5_modify
  • ancIBD.IO.h5_qc
  • ancIBD.IO.ind_ibd
  • ancIBD.IO.prepare_h5
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© Copyright 2023, Harald Ringbauer, Yilei Huang. Revision 92e6803c.

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