ancIBD
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Contents:

  • Overview
  • Installing ancIBD
  • Preparing Input for ancIBD: VCF->HDF5
  • Calling IBD
  • Plot ancIBD output
  • Running ancIBD via bash
  • Running ancIBD on X chromosomes (available from ancIBD v0.6)
  • Detecting IBD2 (available from ancIBD v0.6)
  • Frequently Asked Questions (FAQ)
  • API Reference
    • ancIBD
ancIBD
  • API Reference
  • Edit on GitHub

API Reference

This page contains auto-generated API reference documentation [1].

  • ancIBD
    • ancIBD.IO
      • ancIBD.IO.batch_run
      • ancIBD.IO.h5_duplicates
      • ancIBD.IO.h5_load
      • ancIBD.IO.h5_modify
      • ancIBD.IO.h5_qc
      • ancIBD.IO.ind_ibd
      • ancIBD.IO.prepare_h5
    • ancIBD.ibd_stats
      • ancIBD.ibd_stats.funcs
    • ancIBD.plot
      • ancIBD.plot.plot_df
      • ancIBD.plot.plot_karyotype
      • ancIBD.plot.plot_opphomos
      • ancIBD.plot.plot_posterior
    • ancIBD.ancIBD_summary
    • ancIBD.emission
    • ancIBD.hmm
    • ancIBD.loaddata
    • ancIBD.main
    • ancIBD.postprocessing
    • ancIBD.run
    • ancIBD.run_ancIBD
    • ancIBD.run_ancIBDX
    • ancIBD.transition
[1]

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© Copyright 2023, Harald Ringbauer, Yilei Huang. Revision 92e6803c.

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