`ancIBD.plot.plot_opphomos`

Module Contents

`opp_homos`(g1, g2)	Return opposing homozygotes
`plot_hets`([map_het, het, ax, het_c, c_roh, figsize, ...])	Plot Heterozygotes against genenetic map,
`plot_opp_homos`([path_h5, ch, iids, cutoff, output, ...])	Plot pairwise opp. homoyzgotes. Loads f5 data, and calls and plots opp. homos
`plot_identical_gts`([path_h5, ch, iids, df_ibd, ...])	Plot pairwise opp. homoyzgotes. Loads f5 data, and calls and plots opp. homos

ancIBD.plot.plot_opphomos.plot_hets(map_het=[], het=[], ax=None, het_c='slateblue', c_roh='seagreen', figsize=(14, 2), cm_lim=[], ylim=[-0.1, 1.1], fs=12, alpha=0.3, ms=1, lw=12, title='', min_cm=0, xtickl=True, df_ibd=None, xlabel='centimorgan', ylabel=f'Opp. Homozygote (y/n)', plot=True, savepath=''): Plot Heterozygotes against genenetic map, plus ROH calls. lw: Linewidth of ROH

ancIBD.plot.plot_opphomos.plot_opp_homos(path_h5=f'/n/groups/reich/hringbauer/hapsburg_runs/data/data_eirini/h5/all_ch', ch=16, iids=['MYG001.A0101', 'MYG006.A0101'], cutoff=0.99, output=True, exact=True, cm_lim=[], ms=4, savepath=''): Plot pairwise opp. homoyzgotes. Loads f5 data, and calls and plots opp. homos

ancIBD.plot.plot_opphomos.plot_identical_gts(path_h5=f'/n/groups/reich/hringbauer/hapsburg_runs/data/data_eirini/h5/all_ch', ch=16, iids=['MYG001.A0101', 'MYG006.A0101'], df_ibd=None, cutoff=0.99, output=True, exact=True, cm_lim=[], ms=4, savepath=''): Plot pairwise opp. homoyzgotes. Loads f5 data, and calls and plots opp. homos