ancIBD
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Contents:

  • Overview
  • Installing ancIBD
  • Preparing Input for ancIBD: VCF->HDF5
  • Calling IBD
  • Plot ancIBD output
  • Running ancIBD via bash
  • Running ancIBD on X chromosomes (available from ancIBD v0.6)
  • Detecting IBD2 (available from ancIBD v0.6)
  • Frequently Asked Questions (FAQ)
  • API Reference
ancIBD
  • Python Module Index

Python Module Index

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- ancIBD
    ancIBD.ancIBD_summary
    ancIBD.emission
    ancIBD.hmm
    ancIBD.ibd_stats
    ancIBD.ibd_stats.funcs
    ancIBD.IO
    ancIBD.IO.batch_run
    ancIBD.IO.h5_duplicates
    ancIBD.IO.h5_load
    ancIBD.IO.h5_modify
    ancIBD.IO.h5_qc
    ancIBD.IO.ind_ibd
    ancIBD.IO.prepare_h5
    ancIBD.loaddata
    ancIBD.main
    ancIBD.plot
    ancIBD.plot.plot_df
    ancIBD.plot.plot_karyotype
    ancIBD.plot.plot_opphomos
    ancIBD.plot.plot_posterior
    ancIBD.postprocessing
    ancIBD.run
    ancIBD.run_ancIBD
    ancIBD.run_ancIBDX
    ancIBD.transition

© Copyright 2023, Harald Ringbauer, Yilei Huang. Revision 92e6803c.

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